PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HB-other
Protein Properties Length: 352aa    MW: 39207.4 Da    PI: 7.9366
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11321genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.4e-0641613656
                HCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 36 klgLterqVkvWFqNrRakek 56
                k+ ++ +qV +WFqNrR+ ++
  PEQU_11321 41 KVIVQPKQVLNWFQNRRYAYR 61
                347899***********9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.859163IPR001356Homeobox domain
SuperFamilySSF466896.42E-81562IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-41966IPR009057Homeodomain-like
CDDcd000865.87E-42061No hitNo description
PfamPF167191.9E-40116243IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
KVMEMETCLQ DVNNLSNSIP PRETICVLAE KFSMSAERAG KVIVQPKQVL NWFQNRRYAY  60
RAKVKEPAKL NVSPLPRDDP AQFRNVAPPL PTPQGKSSAR NGVGVYIGSN SSENVEVEFE  120
AKSLRDGAWY DVSAFLSYRM FETGDPEVRI RFTGFGVEED EWINVRKCVR QRSLPCEAGE  180
CVAVLPGDLI LCFQEGNEQA LYFDAHILDA QRRRHDVRGC RCRFLVRYDH DQSEEIVSLK  240
KICRRPETDR RLELLQSSIA PGSGSGSADA AGARSSKNPS QPHPSKDQNT MISKRTRKQR  300
KLVDVNVDEV MTIALPALSN LAVSAAPLIP TQDESPPVIG DNSNVAANHS LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-481162473134SHH1 SAWADEE
4iur_B4e-481162473134SHH1 SAWADEE
4iuq_A4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-481162473134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805940.11e-150PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4
SwissprotQ8RWJ71e-111SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM0SQ081e-146M0SQ08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18450_0011e-146(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-94sequence-specific DNA binding transcription factors;sequence-specific DNA binding